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Catherine
F. Clarke Professor of Biochemistry B.S. and Ph.D., University of California, Los Angeles |
| Phone:
(310) 825-0771 Fax: (310) 206-5213 E-mail:cathy@chem.ucla.edu |
UCLA Department
of Chemistry & Biochemistry |
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Research Overview Elucidating Q biosynthesis Q and aging These results suggest that clk-1 is essential for Q biosynthesis, and that the aging and developmental phenotypes previously described may be attributed to Q levels. Our recent studies indicate that both mean and maximum life span of wild-type nematodes fed Q-less diets is extended 60%. This life span extension is quite robust and is observed in all Age mutants tested so far, when transferred to the Q-less diet as adults. Our current studies are aimed towards defining the metabolic alterations resulting from dietary Q, and should help determine how diet/environment and genotype interact to change longevity. Based on the strong conservation of Q biosynthesis and function, our findings should be very relevant to aging in other organisms.
From my Group 2001-Present 44. Jonassen, T., Larsen, P. L. and Clarke, C. F. (2001) "A dietary source of coenzyme Q is essential for growth of long-lived Caenorhabditis elegans clk-1 mutants." Proc. Natl. Acad. Sci. U.S.A. 98, 421-426. 45. Do, T. Q., Hsu, A. Y., Jonassen, T., Lee, P. T., and Clarke, C. F. (2001) "A defect in coenzyme Q biosynthesis is responsible for the respiratory deficiency in Saccharomyces cerevisiae abc1 mutants." J. Biol. Chem. 276, 18161-18168. 46. Belogrudov,
G. I., Lee, P. T., Jonassen, T., Hsu, A. Y., Gin, P., and Clarke,
C. F. (2001) "Yeast COQ4 encodes a mitochondrial protein required
for coenzyme Q biosynthesis." Arch. Biochem. Biophys. 392, 48-58. 49. Jonassen, T., Marbois, B. N., Faull, K. F., Clarke, C. F. and Larsen, P. L. (2002) "Development and fertility in C. elegans clk-1 mutants depends upon transport of dietary coenzyme Q8 to mitochondria." J. Biol. Chem. 277, 45020-45027. 50. Gin, P. Hsu, A.Y., Rothman, S., Jonassen, T., Lee, P.T., Tzagoloff, A. and Clarke, C.F. (2003) "The Saccharomyces cerevisiae COQ6 gene encodes a flavin dependent monooxygenase required for coenzyme Q biosynthesis." J. Biol. Chem. 278, 25308-25316. 51. Jonassen, T., Davis, D. E., Larsen, P. L., and Clarke, C. F. (2003) "Reproductive fitness and quinonecontent of C. elegans clk-1 mutants fed coenzyme Q isoforms of varying length." J. Biol. Chem. 278, 51735-51742. 52. Baba, S.W., Belogrudov,
G.I., Lee, J.C., Lee, P.T., Strahan, J., Shepherd, J.N., Clarke,
C.F. (2004) "Yeast coq5 C-methyltransferase is required
for stability of other polypeptides involved in coenzyme q biosynthesis."
J. Biol Chem. Mar 12;279(11):10052-9.
54. Hsieh, E. J., Dinoso, J. B., and Clarke, C. F. (2004) "A tRNA-TRP gene mediates the suppression of cbs2-223 previously attributed to ABC1/COQ8." Biochem. Biophys. Res. Commun. 317, 648-653. 55. Padilla, S., Jonassen, T., Jimenez-Hidalgo, M. J., Fernandez-Ayala, D. J. M., Lopez-Lluch, G. M., Marbois, B., Navas, P., Clarke, C. F. and Santos-Ocana, C. (2004) "Demethoxy-Q, an intermediate of coenzyme Q biosynthesis, fails to support respiration in Saccharomyces cervisiase and lacks antioxidant activity". J. Biol. Chem. 279, 25995-26004. 56. Dyall, S.D., Yan, W., Delgadillo-Correa, M.G., Lunceford, A., Loo, J.A., Clarke, C.F., Johnson, P.J. (2004) "Non-mitochondrial complex I proteins in a hydrogenosomal oxidoreductase complex." Nature. Oct 28;431(7012):1103-7. 57. Gin, P., Clarke, C.F. (2004) "Genetic evidence for a multi-subunit complex in coenzyme Q biosynthesis in yeast and the role of the Coq1 hexaprenyl diphosphate synthase." J Biol Chem. Jan 28;280(4):2676-81. 58. Marbois, B., Gin, P., Faull, K.F., Poon, W.W., Lee, P.T., Strahan, J., Shepherd, J.N., Clarke, C.F. (2005) "Coq3 and Coq4 define a polypeptide complex in yeast mitochondria for the biosynthesis of coenzyme Q." J Biol Chem. May 27;280(21):20231-8. 59. Johnson, A., Gin, P., Marbois, B.N., Hsieh, E.J., Wu, M., Barros, M.H., Clarke, C.F., Tzagoloff, A. (2005) "COQ9, a New Gene Required for the Biosynthesis of Coenzyme Q in Saccharomyces cerevisiae." J Biol Chem. Sep 9;280(36):31397-404. 60. Barros, M. H., Johnson, A., Gin, P., Marbois, B. N., Clarke, C. F. and Tzagoloff, A. (2005) “The Saccharomyces cerevisiae COQ10 gene encodes a START domain protein required for function of coenzyme Q in respiration.” J. Biol. Chem. 280, 42627-42635. 61. Tran, U. C., Marbois, B., Gin, P., Gulmezian, M., Jonassen, T., and Clarke, C. F. (2006) “Complementation of Saccharomyces cerevisiae coq7 mutants by mitochondrial targeting of the Escherichia coli UbiF polypeptide: two functions of yeast Coq7 polypeptide in coenzyme Q biosynthesis.” J. Biol. Chem. 281, 16401-16409. 62. Gulmezian, M., Zhang, H., Javor, G. T., and Clarke, C. F. (2006) “Genetic Evidence for an interaction of the UbiG O-methyltransferase with UbiX in Escherichia coli coenzyme Q biosynthesis.” J. Bacteriol. 188, 6435-6439. 63. Hsieh, E. J., Gin, P., Gulmezian, M., Tran, U. C., Saiki, R., Marbois, B. N. and Clarke, C. F. (2007) “Saccharomyces cerevisiae Coq9 polypeptide is a subunit of the mitochondrial coenzyme Q
biosynthetic complex.” Arch. Biochem. Biophys. 463, 19 -26. 69.
Saiki R, Lunceford AL, Shi Y, Marbois B, King R, Pachuski J, Kawamukai M, Gasser DL, Clarke CF. (2008) "Coenzyme Q10 Supplementation Rescues Renal Disease in Pdss2kd/kd mice with mutations in Prenyldiphosphate synthase subunit 2." 70. Do TQ, Moshkani S, Castillo P, Anunta S, Pogosyan A, Cheung A, Marbois B, Faull KF, Ernst W, Chiang SM, Fujii G, Clarke CF, Foster K, Porter E. (2008) "Lipids including cholesteryl linoleate and cholesteryl arachidonate contribute to the inherent antibacterial activity of human nasal fluid."
J Immunol. Sep 15;181(6):4177-87. |
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B.S., University of California, Los Angeles |
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B.S., University of California, Los Angeles |
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B.S., University of California, Los Angeles |
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Former
Lab Members
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Updates?
We'd like to know! E-mail cathy@mbi.ucla.edu
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Researchers
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| Dr. Grigory Belogrudov | Department of Physiology, UCLA School of Medicine |
Research Associate, University of Illinois Champagne-Urbana |
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Research Associate, University of Rutgers |
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| Dr. Pam Larsen | University of Texas Health Sciences Center at San Antonio, Dept. of Cellular and Structural Biology |
Postdoctoral Fellows |
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B.A., M.S., & Ph.D. University of Shimane |
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Ph.D Students
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| B.S., Brigham Young University, Ph.D., University of California, Los Angeles 2008 | |
| Dr. UyenPhuong C. Tran | B.S., University of California, Los Angeles, Ph.D., University of California, Los Angeles 2007 |
| Dr. Melissa Gulmezian | B.A., University of California, Irvine, Ph.D., University of California, Los Angeles 2006 |
| Dr.
Thai Do |
B.S., Ph.D., University of California, Los Angeles |
| Dr. Peter Gin | B.S., Ph.D. 2005, University of California, Los Angeles - Postdoctoral Researcher with Dr. Stephen Young, Dept. of Med. UCLA |
| Dr. Edward Hsieh | Ph.D. 2006, University of California, Los Angeles - Postdoctoral Fellow with Mike MacCoss at Univ. of Washington, Seattle |
| Dr. Tanya Jonassen | B.S., Ph.D., University of California, Los Angeles - Researcher - Ceres (Malibu, CA) |
| Dr. Wayne
Poon |
B.S., Ph.D. University of California, Los Angeles - Postdoctoral Fellow, University of California, Irvine |
| Master Students | |
| Suzie Ward Baba | |
| Diana Davis | B.S., North Carolina State University |
| Undergraduate Students | |
| Letian Xie | B.S., Biochemistry, University of California, Los Angeles |
| Amjad Nazzal | current Biochemistry major, University of California, Los Angeles |
| Kyle Hyman | Class of 2008, Biochemistry, University of California, Los Angeles |
| Class of 2001, Biochemistry, University of California, Los Angeles | |
| B.S., M.S., Biochemistry, University of California, Los Angeles | |
| Class of 2001 - Biochemistry, University of California, Los Angeles | |
| Dang, Peter | Class of 2006 - Biochemistry, University of California, Los Angeles - Masters student UCLA School of Dentistry |
| Under Construction...... |
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Updated 04/22/09