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Feigon Lab PUBLICATIONS |
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Recent Publications: M.
Kang, R.D. Peterson, and J. Feigon:
“Structural Insights into riboswitch control of the biosynthesis of
queuosine, a modified nucleotide found in the anticodon of tRNA” Molecular Cell 33, 784-90 (2009) [abstract] M. Singh, F.A. Gonzales, D. Cascio, N. Heckmann, G. Chanfreau, and J. Feigon:
“Structure and functional studies of the CS domain of the essential H/ACA ribonucleoparticle assembly protein SHQ1” J. Biol. Chem. 284, 1906-16 (2008) [abstract] N.K. Kim, Q. Zhang, J. Zhou, C.A. Theimer, R.D. Peterson, and J. Feigon: “Solution structure and dynamics of the wild-type pseudoknot of human telomerase RNA” J. Mol. Biol. 384, 1249-61 (2008) [abstract] C.A.
Theimer, B.E. Jady, N. Chim, P. Richard, K.E. Breece, T. Kiss, and J.
Feigon: “Structural and functional characterization of human telomerase
RNA processing and Cajal Body localization signals” Molecular Cell 27, 869-881 (2007) [abstract] K.
Januszyk, P.W. Li, V. Villareal, D. Branciforte, H. Wu, Y. Xie, J.
Feigon, J.A. Loo, S.L. Martin, and R.T. Clubb: "Identification and
solution structure of a highly conserved C-terminal domain required for
the retrotransposition of Long Interspersed Nuclear Element-1" J. Biol. Chem. 282, 24893-24904(2007) [abstract] H.
Wu and J. Feigon: "H/ACA small nucleolar RNA pseudouridylation pockets
bind substrate RNA to form three-way junctions that position the target
U for modification" PNAS 104, 6655-6660 (2007). [abstract] R.J. Richards, H. Wu, L. Trantirek, C.M. O'Connor, k. Collins, and J. Feigon: "Structural study of elements of Tetrahymena telomerase RNA stem-loop IV domain important for function" RNA 12, 1475-1485 (2006). [abstract] C.A. Theimer and J. Feigon: "Structure and function of telomerase RNA", Curr. Opin. Struct. Biol. 16, 307-318 (2006). [abstract] R.J. Richards, C.A. Theimer, L.D. Finger, and J. Feigon: "Structure of the Tetrahymena thermophila telomerase RNA helix II template boundary element", Nucleic Acids Res. 34, 816-825 (2006). [abstract] M.
Khanna, H. Wu, C. Johansson, M. Caizergues-Ferrer, and J. Feigon,
"Structural study of the H/ACA snoRNP components Nop10p and the 3'
hairpin of U65 snoRNA", RNA 12, 40-52 (2006) [abstract] A.J.
Dingley, R.D. Peterson, S. Grzesiek, and J. Feigon, "Characterization
of the cation and temperature dependence of DNA quadruplex hydrogen
bond properties using high-resolution NMR", J. Am. Chem. Soc. 127, 14466-72 (2005). [abstract] A.K.
Henras, M. Sam, S.L. Hiley, H. Wu, J. Feigon, T.R. Hughes, and G.F.
Chanfreau: "Biochemical and genomic and analysis of substrate
recognition by the double stranded RNA binding domain of yeast RNase
III", RNA 11, 1225-1237 (2005). [abstract] P.Z.
Qin, J. Feigon, and W. Hubbell: "Site-directed spin labeling studies
reveal a coupled mechanism in the formation of the GAAA
tetraloop/receptor RNA tertiary interaction", J. Mol. Biol. 351, 1-8 (2005). [abstract] H. Wu, L.D. Finger, J. Feigon: "Structure determination of Protein/RNA complexes by NMR", in Methods in Enzymol. (T.L. James, ed.) Academic Press, 394, 525-545 (2005). [abstract] C.A.
Theimer, C.A. Blois, and J. Feigon: "Structure of the human telomerase
RNA pseudoknot reveals conserved tertiary interactions essential for
function", Mol. Cell 17, 671-682 (2005). [abstract] M.
Kamionka and J. Feigon: "Structure of the XPC binding domain of hHR23A
reveals hydrophobic patches for protein interaction", Protein Science,
13, 2370-2377 (2004). [abstract] J. Feigon and C. Bustamante: “Nucleic acids – controlling biology and controlled by biophysics” Curr. Opin. Struct. Biol., 14, 333-334 (2004). L.D.
Finger, C. Johansson, B. Rinaldi, P. Bouvet, and J. Feigon
"Contributions of the RBDs and linker domains and RNA structure to the
specificity and affinity of the nucleolin RBD12/NRE interaction"
Biochemistry, 43, 6937-6947 (2004). [abstract] H.
Wu, A. Henras, G. Chanfreau, and J. Feigon: “Structural basis for
recognition of the AGNN tetraloop RNA fold by the double-stranded RNA
binding domain of Rnt1p Rnase III”, Proc. Natl. Acad. Sci. USA, 101,
8307-8312 (2004). [abstract] C.
Johansson, L.D. Finger, L. Trantirek, T.D. Mueller, S. Kim, I.A.
Laird-Offringa, and J. Feigon: “Solution structure of the complex
formed by the two N-terminal RNA-binding domains of nucleolin and a
pre-rRNA target”, J. Mol. Biol., 337, 799-816 (2004). [abstract] T.D.
Mueller, M. Kamionka, and J. Feigon: “Specificity of the interaction
between UBA domains and ubiquitin”, J. Biol. Chem., 279, 11926-11936
(2004). [abstract] R.
Stefl, H. Wu, S. Ravindranathan, V. Sklenár, and J. Feigon: “DNA
A-tract bending in three dimensions: Solving the dA4T4 versus dT4A4
conundrum”, Proc. Natl. Acad. Sci. USA, 101, 1177-1182 (2004). [abstract] R.D.
Peterson, C.A. Theimer, H. Wu, and J. Feigon: “New Applications of 2D
Filtered/Edited NOESY for Assignment and Structure Elucidation of RNA
and RNA-Protein Complexes”, J. Biomol. NMR, 28, 59-67 (2004). [abstract] C.A.
Theimer, L.D, Finger, and J. Feigon: “YNMG tetraloop formation by a
dyskeratosis congenita mutation in human telomerase RNA”, RNA, 9,
1446-1455 (2003). [abstract] L.D.
Finger, L. Trantirek, C. Johansson, and J. Feigon: “Solution structures
of stem-loop RNAs that bind to the two N-terminal RNA-binding domains
of nucleolin”, Nucleic Acids Res. 31, 6461-6472 (2003). [abstract] T.M.
Mueller and J. Feigon: “Structural determinants for the binding of
ubiquitin-like domains to the proteasome”, EMBO J., 22, 4634-4645
(2003). [abstract] P.Z.
Qin, K. Hideg, J. Feigon, and W.L. Hubbell: "Monitoring RNA base
structure and dynamics using site-directed spin labeling",
Biochemistry, 42, 6772-6783 (2003). [abstract] C.A.
Theimer, L.D. Finger, L. Trantirek, and J. Feigon: "Mutations linked to
dyskeratosis congenita cause dynamic changes in telomerase RNA
structure", Proc. Natl. Acad. Sci. USA, 100, 449-454 (2003). [abstract] |